PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056425-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 239aa    MW: 26621.2 Da    PI: 6.351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056425-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18137187255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp     k +r +lg+f taeeAa a+++a+ k++g
  PSME_00056425-RA 137 HYRGVRQRP-WGKFAAEIRDP---ArKGARLWLGTFNTAEEAALAYDRAAFKIRG 187
                       7********.**********8...4445************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-31136195IPR001471AP2/ERF domain
CDDcd000185.17E-30137195No hitNo description
PfamPF008471.3E-13137187IPR001471AP2/ERF domain
PROSITE profilePS5103224.263137195IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-23137196IPR016177DNA-binding domain
SMARTSM003802.0E-37137201IPR001471AP2/ERF domain
PRINTSPR003676.9E-11138149IPR001471AP2/ERF domain
PRINTSPR003676.9E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTEVTAGKDM DYMLELIRHH LLEVEDDRAD LDRDQESSSL SFLPSAGGGG VYVNIDEDHD  60
DIQANEDVIA ASRPCQNSRS QSTSQHNQNA FTVTQQHSSS SSSVCTVIRR AEAVKVKGEP  120
QLRQEENGEM KHSWARHYRG VRQRPWGKFA AEIRDPARKG ARLWLGTFNT AEEAALAYDR  180
AAFKIRGDRA LVNFPLALAP DSQNGFPVGR TDHTKKRGRE EAEGHGVGNR SEDLPTHSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-32136196464ATERF1
3gcc_A2e-32136196464ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ73e-61A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-25ethylene responsive element binding factor 2