PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056437-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 78aa    MW: 8764.76 Da    PI: 5.8328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056437-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-081051342
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcks 42
                      +WTte  +++ +a + + ++   +W+ +a+++  g++++++k 
  PSME_00056437-RA 10 NWTTEQNKQFEKALAIYDKDtadRWHNVASMVT-GKSPEEVKR 51
                      8*******************************9.*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.583661IPR017884SANT domain
SMARTSM007178.0E-6759IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-5960IPR009057Homeodomain-like
CDDcd001673.28E-61051No hitNo description
PfamPF002492.4E-61051IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-111063IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASSSNNGTN WTTEQNKQFE KALAIYDKDT ADRWHNVASM VTGKSPEEVK RNYEILEEDL  60
NGIAAGKVPI PKYKYLAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-27174174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1135572e-59BT113557.1 Picea glauca clone GQ03413_A01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731579.12e-32protein RADIALIS-like 4
RefseqXP_021738626.12e-32protein RADIALIS-like 4
SwissprotQ1A1738e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC12e-29D5ADC1_PICSI; Uncharacterized protein
STRINGXP_010539897.12e-29(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-30RAD-like 6