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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00056523-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 70aa MW: 8119.55 Da PI: 11.2483 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 7 | 30 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
+W+ Ia+ ++ gRt++++k++w++
PSME_00056523-RA 7 CRWSIIAAQLP-GRTDNDIKNHWNT 30
57*********.***********97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 15.927 | 1 | 36 | IPR017930 | Myb domain |
| CDD | cd00167 | 2.80E-6 | 3 | 30 | No hit | No description |
| Pfam | PF00249 | 2.2E-7 | 7 | 30 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 5.93E-9 | 7 | 37 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 7 | 36 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 70 aa Download sequence Send to blast |
MTLLPLCRWS IIAAQLPGRT DNDIKNHWNT RLKKKLLGKR KDHKTSRLAV VRQEKKDVRS 60 NTCFANMGNC |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_026382762.1 | 2e-19 | transcription factor RAX3-like | ||||
| Refseq | XP_026460435.1 | 2e-19 | transcription factor RAX3-like | ||||
| TrEMBL | D5ABB6 | 2e-19 | D5ABB6_PICSI; Uncharacterized protein | ||||
| STRING | Aquca_068_00041.1 | 5e-18 | (Aquilegia coerulea) | ||||
| STRING | cassava4.1_011054m | 5e-18 | (Manihot esculenta) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G65790.1 | 5e-11 | myb domain protein 68 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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