PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056602-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 233aa    MW: 26230.1 Da    PI: 4.6623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056602-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.6e-153988255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p++   r + +lg++  a++Aa+a++aa  +l+g
  PSME_00056602-RA 39 QFKGIRLRK-WGSWVSEIRLPRS---REKLWLGSYPNAQQAARAYDAAVYCLRG 88
                      69*****99.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.6E-273897IPR001471AP2/ERF domain
SMARTSM003803.3E-2739102IPR001471AP2/ERF domain
PROSITE profilePS5103220.2183996IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-173998IPR016177DNA-binding domain
CDDcd000182.40E-233998No hitNo description
PfamPF008473.4E-84088IPR001471AP2/ERF domain
PRINTSPR003672.2E-94051IPR001471AP2/ERF domain
PRINTSPR003672.2E-97898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDKPSPQEND HDHARELDGE NDHDHARELD GDGGKTCRQF KGIRLRKWGS WVSEIRLPRS  60
REKLWLGSYP NAQQAARAYD AAVYCLRGPK AKFNFPNSVP DIPSASSLSR RQIQLAAAKY  120
ALDRLHSNPP SLQNISNLAM EEAAVPSRLA STSEMGLLSN GHQILEKQEL DLTDCLFEVS  180
DSDVGCLSLN LERMLSIEEV SAFELIHSTS QEQQQEEQDE INSLIDPTEL WNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ92e-58D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.15e-27ERF family protein