PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056648-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 254aa    MW: 27966.8 Da    PI: 7.4496
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056648-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-18153203255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp     k  r++lg+f taeeAa a+++a+  ++g
  PSME_00056648-RA 153 HYRGVRQRP-WGKFAAEIRDP---ArKGSRIWLGTFNTAEEAALAYDRAAFGIRG 203
                       7********.**********8...4445**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-32152211IPR001471AP2/ERF domain
CDDcd000182.85E-29153211No hitNo description
PROSITE profilePS5103223.828153211IPR001471AP2/ERF domain
PfamPF008471.3E-12153203IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-23153212IPR016177DNA-binding domain
SMARTSM003803.7E-38153217IPR001471AP2/ERF domain
PRINTSPR003673.9E-11154165IPR001471AP2/ERF domain
PRINTSPR003673.9E-11177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEVDGTDQGE NKNMLELIRH HLLEVEVEDD LDINEGNYSS FWLSPTAAST GSNIHINIEN  60
HDDAQANAPA TARSWQDLNR RSTSQHNENG FTDSSSLCAV RSAAEAFKVT PQPHSTENGE  120
MKHSCARHYR AFKVTPQPHS TENGEMKHSC ARHYRGVRQR PWGKFAAEIR DPARKGSRIW  180
LGTFNTAEEA ALAYDRAAFG IRGAKALLNF PLGLPSHSEN GSAVGHIGQK RQRGREAAAG  240
GRDIGVKELR SGAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31152212464ATERF1
3gcc_A2e-31152212464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ78e-58A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-25ethylene responsive element binding factor 2