PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056753-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 117aa    MW: 13134 Da    PI: 6.4932
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056753-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114470127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C ++++tG C++G+ C+++H++
  PSME_00056753-RA 44 PGQPDCAHYLKTGDCSFGAACRYNHPK 70
                      5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8684371IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-44370IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-54872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-44970IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MDLDVSSVNS VLTSTEPIYS AAKAIPTTQP REFPTKTEAF PERPGQPDCA HYLKTGDCSF  60
GAACRYNHPK ERNEQSSACM LSEMGLPLRP VSSFYSHFDV QLLLHILCFN FFLLKML
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1179235e-98BT117923.1 Picea glauca clone GQ03917_G13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248777.13e-20PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
RefseqXP_010248778.13e-20PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ84W915e-18C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB8LMQ06e-23B8LMQ0_PICSI; Uncharacterized protein
STRINGXP_010248777.11e-19(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-20C3H family protein