PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056799-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 385aa    MW: 43152.4 Da    PI: 5.0992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056799-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063235257123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C++ F++   L  H rtH
  PSME_00056799-RA 235 HECPVCHRNFTSGQALGGHKRTH 257
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-7165190IPR007087Zinc finger, C2H2
SMARTSM003550.81165188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367165193IPR007087Zinc finger, C2H2
PROSITE patternPS000280167188IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-5233259No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4233258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-11235258IPR007087Zinc finger, C2H2
SMARTSM003550.14235257IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408235262IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAIPYVSEE EGEESLFQFR SPDMDMEPPH FVYGICSATK GKRSRRARQS LSLIPKSDIS  60
AHQQDQEDQD QENQEDQDQD QEDQEQEDEE EMAARCLLML YSDGSDRQSQ SPTTTSSSES  120
LAPATLHPIR RRIKKPKRFD VGDADSPYSL EWDADFKQEM TTRLYSCKSC NKKFSSFQAL  180
GGHRASCHYK SKSVFPGLQI DEGFKEEAAH CSFYGPSVET YKQSLCTEVK KVRLHECPVC  240
HRNFTSGQAL GGHKRTHSTP PATAMHTSTS LSTTEQQLLS PSRRTETLDL SMPAEDANDS  300
IQMQHSSAVS VNLGADLLDS TSWPPYDHKV VSYNSSQAWL IESHQPGHVV REDEADSQLG  360
SNSEFDRGRD LGCKRAGLPW ITSVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1175440.0BT117544.1 Picea glauca clone GQ03902_N14 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-12C2H2-like zinc finger protein