PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056816-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 64aa    MW: 7648.83 Da    PI: 9.6881
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056816-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox382.8e-122263256
                      HHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56
                      +LA +lgL+ rqV vWFqN Ra++k
  PSME_00056816-RA  2 QLAVELGLQPRQVAVWFQNCRARWK 26
                      8***********************9 PP
2HD-ZIP_I/II85.47.6e-282623191
       HD-ZIP_I/II 31 elareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                      +la eLglqprqvavWFqn RAR+ktk+lE+dy+ Lk++y+++++++++L+ +v++L+++l
  PSME_00056816-RA  2 QLAVELGLQPRQVAVWFQNCRARWKTKHLEQDYDDLKQQYEEVVSQKKKLKGQVKTLQSDL 62
                      8********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.904128IPR001356Homeobox domain
PfamPF000461.2E-9226IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-13235IPR009057Homeodomain-like
CDDcd000863.68E-7229No hitNo description
SuperFamilySSF466891.45E-11238IPR009057Homeodomain-like
PROSITE patternPS000270326IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MQLAVELGLQ PRQVAVWFQN CRARWKTKHL EQDYDDLKQQ YEEVVSQKKK LKGQVKTLQS  60
DLFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797128.15e-19homeobox-leucine zipper protein HOX21
SwissprotQ8S7W93e-18HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA9NYL73e-25A9NYL7_PICSI; Uncharacterized protein
STRINGEFJ090181e-19(Selaginella moellendorffii)
STRINGEFJ300741e-19(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-19HD-ZIP family protein