PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056855-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 265aa    MW: 29773.3 Da    PI: 5.2251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056855-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-194088355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr+++ +g+Wv+eIr p   g ++r++lg+++ +e+Aa+a++ a+++l+g
  PSME_00056855-RA 40 YRGVRRRR-WGKWVSEIRQP---GTKTRIWLGSYDEPEMAARAYDVAALCLKG 88
                      9****777.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.6953996IPR001471AP2/ERF domain
SMARTSM003806.4E-3439102IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-213997IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-293997IPR001471AP2/ERF domain
PRINTSPR003673.6E-94051IPR001471AP2/ERF domain
CDDcd000183.19E-304098No hitNo description
PfamPF008477.2E-134088IPR001471AP2/ERF domain
PRINTSPR003673.6E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDSCSNMVDC NTRKRNRAGE KETRNPMYRG GEKETKNPMY RGVRRRRWGK WVSEIRQPGT  60
KTRIWLGSYD EPEMAARAYD VAALCLKGKL ALPNFPHLIH TLPRPASLDP IDIQYAAAKA  120
ADLAIRQQSH PEITTAAVEF PNVGGSIEAA AATVVADKSR ESAQMNFDVE EAPDHAAANF  180
SYCRYEIDDG GEGSLVNLRI RTGRTDQCSS SLFDEEMQQF NSPNLVMNMA EALLLTPPRL  240
NEQHETDDYY GLDQTAAFEF LWTSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1440971573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426907.13e-37ethylene-responsive transcription factor ERF036
TrEMBLV4SHT97e-36V4SHT9_9ROSI; Uncharacterized protein
STRINGXP_006426907.11e-36(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.17e-26ERF family protein