PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056914-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 280aa    MW: 29938.8 Da    PI: 8.4054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056914-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-0875101127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt+lC+++     C++Gd+C+FaHg+
  PSME_00056914-RA  75 YKTRLCNRYGTDEGCQFGDKCHFAHGE 101
                       9********9999************96 PP
2zf-CCCH39.97.2e-13246270227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC +fa+ GtC +GdrC+FaHgp
  PSME_00056914-RA 246 KTKLCENFAK-GTCTFGDRCNFAHGP 270
                       9*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.4561427IPR000571Zinc finger, CCCH-type
SMARTSM003560.00374101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.48874102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-974105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-1475105IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-575101IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.79E-16151231IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.4E-17158229IPR004088K Homology domain, type 1
SMARTSM003228.5E-11158228IPR004087K Homology domain
PROSITE profilePS5008414.361159223IPR004088K Homology domain, type 1
CDDcd001052.59E-13161223No hitNo description
PfamPF000131.0E-11161225IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.5E-15240275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-9242275IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-8244270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.722244271IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10246270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLTIFASFCS TSGCPFGEGC HYLHYVPGGV NAIPQMPTLG NTFGAASRKA MGFTPSVGLA  60
SSVPPLDKPD PGLGYKTRLC NRYGTDEGCQ FGDKCHFAHG EKELRKGNVI AKDLERERIA  120
GPYGSIAGPG LDLEGKQAGY PLYRDPPPGI SAAANFGASS TAKISIDASY ASCIIGKGGA  180
NTKQIYRSTG AKMFIKEHDS NPNLKNVELE GSFDQINQAT AMVRELIRQN DMQSTKPSVH  240
GPQNRKTKLC ENFAKGTCTF GDRCNFAHGP NELREHTAGP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1094291e-121BT109429.1 Picea glauca clone GQ03208_E18 mRNA sequence.
GenBankEF0848071e-121EF084807.1 Picea sitchensis clone WS0282_P16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.12e-88PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-74C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9NU061e-158A9NU06_PICSI; Uncharacterized protein
STRINGXP_010265899.17e-88(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-48C3H family protein