PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056943-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bZIP

Protein Properties

Length: 126aa MW: 15067.4 Da PI: 10.6389

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056943-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25	4.2e-08	30	65	10	45
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++kN e+ +rsR RK++ +eL+ + L aeNk++ PSME_00056943-RA 30 MEKNGESVKRSRVRKQQHFDELRAHMVHLMAENKEY 65 89*******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	4.15E-5	30	65	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-6	30	64	No hit	No description
SuperFamily	SSF57959	3.02E-5	58	106	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MFSNIESAKR SQLRKQQHLD ELRAQMVHLM EKNGESVKRS RVRKQQHFDE LRAHMVHLMA 60 ENKEYAMRSR IQKQQNLDEL TAQKVHIIVE NREILKKRNV ASKHYVHITE DNFLLISKVV 120 ELSQKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	1e-11	basic leucine-zipper 44