PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056972-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 221aa    MW: 24339.7 Da    PI: 7.6663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056972-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-18129179255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g++ AeIrdp++ g   r++lg+f taeeAa a+++a+ +++g
  PSME_00056972-RA 129 HYRGVRNRP-WGKFTAEIRDPTIKG--SRVWLGTFNTAEEAALAYDRAAFRIRG 179
                       69****777.**********97744..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-30129187No hitNo description
Gene3DG3DSA:3.30.730.106.0E-31129187IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22129188IPR016177DNA-binding domain
PROSITE profilePS5103223.367129187IPR001471AP2/ERF domain
SMARTSM003802.8E-37129193IPR001471AP2/ERF domain
PfamPF008472.4E-12129179IPR001471AP2/ERF domain
PRINTSPR003678.4E-11130141IPR001471AP2/ERF domain
PRINTSPR003678.4E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNTNILDFIR HHLLEAGDDL DIIAVDQDQP PRNPSFSFTH TASSSSSTNY VTPTTALNSC  60
QNSSSTNYVT PTTALNSCQN SSSKSTVEDI DYQVTQQQQY SSSSSSSSIN PPQPQEEKNG  120
EIKQSEDMHY RGVRNRPWGK FTAEIRDPTI KGSRVWLGTF NTAEEAALAY DRAAFRIRGT  180
RALVNFPLAL PHNSESGSAV VHKRKRNSVA AGQWNARLGG M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-31129188261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.17e-25ethylene responsive element binding factor 6