PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056979-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 187aa    MW: 21309.7 Da    PI: 12.1181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056979-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000141391711754
                       HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        s++++Lrel+P +     ++l+    Le+A +YI  L
  PSME_00056979-RA 139 ASRIQTLRELMPGS-----RRLDTPVLLEEAADYIVAL 171
                       589*********98.....89**************665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-6140181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MERCSGREPH EGAGRAAFQR KYIRQIVAVL RHVRIEPATS VFGRSRAVKL AADLSLATTA  60
RGRTAWSRAI LRKCFLRLYK SRFQRRSVVK SRVNYQRLAS TKKTRRRCRT TLTGKKSGWQ  120
RFGVASRSWT SSSEAGTVAS RIQTLRELMP GSRRLDTPVL LEEAADYIVA LKFQVQAMQA  180
ITCWYAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NUX45e-45A9NUX4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.23e-11bHLH family protein