PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056983-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 241aa    MW: 26076.8 Da    PI: 8.4938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056983-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-19139189255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp +  k +r++lg+f taeeAa a+++a+ +++g
  PSME_00056983-RA 139 HYRGVRQRP-WGKFAAEIRDPAK--KGARIWLGTFTTAEEAALAYDRAAFRIRG 189
                       7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31138197IPR001471AP2/ERF domain
SMARTSM003803.5E-39139203IPR001471AP2/ERF domain
CDDcd000181.11E-30139197No hitNo description
PROSITE profilePS5103224.171139197IPR001471AP2/ERF domain
PfamPF008475.8E-13139189IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-23139199IPR016177DNA-binding domain
PRINTSPR003676.4E-11140151IPR001471AP2/ERF domain
PRINTSPR003676.4E-11163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MNMLEFIRHH LLEEEDDIEI TGVNFHAPPN YRSSSSSSSI SSSPTAISSS PTVIADSSWD  60
YIQATATTTA SGPCQNSGSR STSEENDNGF TQQPSSSSSS SAAVTAIRRA ESVNVKVKPA  120
PQPQEESGEM SQITSIARHY RGVRQRPWGK FAAEIRDPAK KGARIWLGTF TTAEEAALAY  180
DRAAFRIRGS RALVNFPLNF SSNSVHEPVV DHLMVGHKRK RKNAEVRAAC SEKSCGTATG  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-33138198161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ73e-55A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-27ethylene responsive element binding factor 2