PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056989-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 67aa MW: 7865.88 Da PI: 8.0593

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056989-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.6e-08	17	50	1	33
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgk 33 r +WT+eEd++l ++++ +G + W+ +++ gk PSME_00056989-RA 17 RRAWTPEEDKILSQYIEIHGDHsVWANLPQKAGK 50 679*****************99999999999983 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-7	12	48	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.005	12	51	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.17E-5	14	51	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-6	17	49	IPR001005	SANT/Myb domain
CDD	cd00167	0.0015	19	60	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MGRPRRCRSS EEEVFNRRAW TPEEDKILSQ YIEIHGDHSV WANLPQKAGK SLIVIYQYCR 60 GRCDLGD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60890.1	4e-08	myb domain protein 34