PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057039-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 365aa    MW: 40758 Da    PI: 5.4476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057039-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-18151201255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd    g + +r++lg+f taeeAa a+++a++ ++g
  PSME_00057039-RA 151 RYRGVRRRP-WGKFAAEIRDS---GrQGARVWLGTFKTAEEAAMAYDKAALLIRG 201
                       8********.**********4...5455**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.29E-32150211No hitNo description
Gene3DG3DSA:3.30.730.101.1E-30151209IPR001471AP2/ERF domain
PROSITE profilePS5103223.301151209IPR001471AP2/ERF domain
PfamPF008475.3E-13151201IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22151211IPR016177DNA-binding domain
SMARTSM003803.3E-35151215IPR001471AP2/ERF domain
PRINTSPR003671.1E-10152163IPR001471AP2/ERF domain
PRINTSPR003671.1E-10175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MALETAFPHG TEGPCPHHHG GVVSAERLLE DVWSHFIATG NIDHPIHDER LQPTGCINHG  60
KDKSYCNVED QDQDQVQYPL LLPLKENDSE DMILFQLLNE PAANLGWPAI HNQQEMAIPG  120
ATGSTAYTPA ICNTKMTRAQ GEAAEKPSTK RYRGVRRRPW GKFAAEIRDS GRQGARVWLG  180
TFKTAEEAAM AYDKAALLIR GARASLNFPI DVVTKALADT NYRCCSKLLS SRQKRIKVSD  240
DEIESRKKME VPDVESLVVD FNKYNIAEGD DGMTTMRRKR SIQEVYSGLE VPPPGKHLRS  300
AANYGLIKDT DNDICLDFDS AVVELQDLGS DYLEELLRST EHSNDFLQLP VPPLLDIMMQ  360
TPINK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27150212163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-25ethylene responsive element binding factor 1