PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057099-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-X1
Protein Properties Length: 1043aa    MW: 115564 Da    PI: 8.2784
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057099-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.16.5e-07383401119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H C+ +CHeGpC+pC+
  PSME_00057099-RA 383 CGRHYCENICHEGPCDPCK 401
                       ******************8 PP
2zf-NF-X120.69.9e-07602620119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H C++lCH G CppCp
  PSME_00057099-RA 602 CGQHLCNELCHSGYCPPCP 620
                       ******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.805221278IPR019787Zinc finger, PHD-finger
SuperFamilySSF578504.15E-6223280No hitNo description
PROSITE profilePS500899.229224276IPR001841Zinc finger, RING-type
PROSITE patternPS013590224275IPR019786Zinc finger, PHD-type, conserved site
CDDcd060087.67E-7309366No hitNo description
SMARTSM004380.037328346IPR000967Zinc finger, NF-X1-type
PfamPF014220.53328345IPR000967Zinc finger, NF-X1-type
CDDcd060081.31E-10373422No hitNo description
SMARTSM004382.3E-4383402IPR000967Zinc finger, NF-X1-type
PfamPF014222.5E-6383401IPR000967Zinc finger, NF-X1-type
CDDcd060082.51E-7438481No hitNo description
SMARTSM004380.16448467IPR000967Zinc finger, NF-X1-type
PfamPF014220.12448465IPR000967Zinc finger, NF-X1-type
CDDcd060083.54E-10497543No hitNo description
SMARTSM004380.15507526IPR000967Zinc finger, NF-X1-type
PfamPF014220.0083507525IPR000967Zinc finger, NF-X1-type
SMARTSM00438150567594IPR000967Zinc finger, NF-X1-type
PfamPF0142232567578IPR000967Zinc finger, NF-X1-type
CDDcd060084.87E-7592639No hitNo description
SMARTSM004388.1E-4602621IPR000967Zinc finger, NF-X1-type
PfamPF014229.6E-5602620IPR000967Zinc finger, NF-X1-type
CDDcd060087.03E-5649696No hitNo description
SMARTSM004384.6659677IPR000967Zinc finger, NF-X1-type
PfamPF014221.6667675IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1711742IPR000967Zinc finger, NF-X1-type
PfamPF014220.039711726IPR000967Zinc finger, NF-X1-type
PfamPF01422180744765IPR000967Zinc finger, NF-X1-type
SMARTSM004389.4751772IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1043 aa     Download sequence    Send to blast
MNTSTDQGNN QSNSTVGEYS QRREPNRNMG RNGRREWVPK SYSHPNENSN QNFNGNPNPN  60
QGFRSQRNAG RGHYRYSPAD STSRDVMPSR NGQNQQYGAM RGRGRGNFQR NNYNRNNYNG  120
RNERHYPHQN YSANERIIGQ GNVNEACNLG QSPTSAGFRG QSSTNEDFIG PSNHANHSPT  180
ETTHYMTQMD FRDDRSKINS RNRSNVPQRV QEIQEKLRKG QVECMICYEK IGRSAPVWSC  240
GKCYNIFHLH CTRKWAESCD VGKSQGEPNW RCPGCQSVQN LSLEEIRYYC FCGKVRDPEV  300
EFYITPHSCG GPCGKPLDKG NKIAQAPCSH TCILQCHPGP CATCTAMGPP RPCPCGKTMT  360
TRRCSDQNSI ESCGKQCEKP LECGRHYCEN ICHEGPCDPC KVLINDVSCF CGKTQEKILC  420
GDVEIQGEID WENGVFQCEN VCMKMLSCHN HKCSKKCHPG ECAECEMLPG KVKSCPCGKT  480
QLQKNQRKSC MDPLPTCSVV CAKALPCAKH LCRSTCHPGE CAPCSVFVKE KCRCGSSSRT  540
VPCWKTTEEN ENAKFRCEKL CGEKKNCGKH RCNERCCPKA NQGRGENASH LCVLRCGEKL  600
QCGQHLCNEL CHSGYCPPCP ITILDDLSCA CGKTSIPAPQ PCGTRIPFCS HPCSVPRSCV  660
HPATHNCHPG NCPPCVVPVS KECAGNHVVK VVPCGSQDIF CNKPCGKTRQ CGIHSCTRTC  720
HLPPCDSEIS SSSASVKMSC GQLCGAPRID CKHTCTVPCH PSTSCTDRRC KSPINITCSC  780
GRLTAQVPCD AGGNNMEADP AFEVVLYKLP APLQPLQSHS SRVPIGQRQL VCNDDCTKLK  840
RMYPFGHCTT KTDLPEAQIS DLIRREPEWV SDVEERFRYL VLYNTNDIRL HVFCAMPKEK  900
RDALKLLAER CNLSVYSVGR DPRCVLIVQA TQKSIAPLLN NRNPKGSLPK TGHVRPLPFK  960
SSVDMDPRLV IALFDLPSDA NVNSLILRFG GECELVWLDN NNALVVFKDQ TKAATALRVV  1020
NHASAYRGAT EAAANSVMPS RVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828449.10.0NF-X1-type zinc finger protein NFXL1
TrEMBLW1NKX50.0W1NKX5_AMBTC; Uncharacterized protein
STRINGERM958650.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1