PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057104-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 240aa    MW: 27270.3 Da    PI: 5.5445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057104-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.2e-191968255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+Wv+eIr p   g ++r++lg+++ +e+Aa+a++ a+++l+g
  PSME_00057104-RA 19 KYRGVRRRR-WGKWVSEIRQP---GTKTRIWLGSYDKPEMAARAYDVAALSLKG 68
                      8*****777.**********8...325************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-291877IPR001471AP2/ERF domain
PfamPF008471.2E-121968IPR001471AP2/ERF domain
PROSITE profilePS5103222.9981976IPR001471AP2/ERF domain
SMARTSM003804.8E-341982IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-211977IPR016177DNA-binding domain
PRINTSPR003673.2E-92031IPR001471AP2/ERF domain
CDDcd000181.08E-232778No hitNo description
PRINTSPR003673.2E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDYNVRKRIR SGEETHSRKY RGVRRRRWGK WVSEIRQPGT KTRIWLGSYD KPEMAARAYD  60
VAALSLKGKS ALPNFPHLIH ILPRPASLDP TDIQYAAAEA ATLSFNQHSP AKISESLPDF  120
LEHHSTSLVK FGESMEAAAT DENRHEPVQM NNNIKEADHH VADFVYCGHE TSDAVAEASS  180
SSLFDEGLQQ FDWPNFVMNM AEAPLLTPPR LDNLEAQDYF YDIDDWTDQP AGFGFLWGNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1619771473Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1526RKRIRSGEETHSRKYRGVRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.18e-24ERF family protein