PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057136-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 491aa    MW: 54487.4 Da    PI: 6.6352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057136-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-143481253
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                      +y+GVr+++ +gr++AeI+dp++   ++r +lg+++taeeAa a+  a++++
  PSME_00057136-RA 34 RYRGVRRRP-WGRFAAEICDPKT---KQRRWLGTYDTAEEAACAYAFAARAM 81
                      69*******.**********954...4999***************8888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.18E-143466No hitNo description
SMARTSM003805.2E-273497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-243490IPR001471AP2/ERF domain
PROSITE profilePS5103219.8883491IPR001471AP2/ERF domain
PfamPF008473.8E-93481IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-183491IPR016177DNA-binding domain
PRINTSPR003678.8E-93546IPR001471AP2/ERF domain
PRINTSPR003678.8E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKSQQQRSEL QKNESLSPNK LSEKQFKRGK EAGRYRGVRR RPWGRFAAEI CDPKTKQRRW  60
LGTYDTAEEA ACAYAFAARA MSGIKGRTNF IYLNSEHCML STPTPPASLT GSAFPTNIKD  120
PFSQKPQKLK DSWPDCLWRD SSTTRPRPCE EAKQQQQKQQ FSVNGGYNML GSTVSSWRPS  180
NNEIENNNNQ LLAGAGSSSV VPVSLPRDHH SINASTWQNL PLADPLLLSL SKNTIDHTHR  240
STIPSPVSSS TTCSSATKIS DHKPAFNNNI TITAENAIPL SNPVESVYFL PCLEEPASEV  300
CSLVSPYSYT LSSNVEHQFQ NLANSNGHSD SGLLDQIISG HLPMSVSASS TTSSVCIPKY  360
FSNNNTLNCA VCVPQENYST ITATCTGFNT TDHIMADLET FIEANYIGLY FNPEAQQQPQ  420
DQQQPPPPPQ DQPQQQQQLE ANNFNSTHFS APYPYTNYSF SMPPISDALE EILHLTPKLF  480
DSQQYGNGYY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-172990971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-09ERF family protein