PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057190-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 182aa    MW: 20575.3 Da    PI: 8.0925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057190-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.91.2e-084282852
               AP2 28 rkrfslgkfgtaeeAakaaiaarkk 52
                      ++r++lg+f tae+Aa+a+++a+  
  PSME_00057190-RA  4 KTRVWLGTFETAEDAARAYDEAAVL 28
                      48********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.4E-10146IPR001471AP2/ERF domain
PROSITE profilePS5103212.774140IPR001471AP2/ERF domain
PfamPF008471.9E-5227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-17340IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-10341IPR016177DNA-binding domain
CDDcd000187.24E-15442No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRRKTRVWLG TFETAEDAAR AYDEAAVLMC GPQHAKTNFT YDPNAPPSSK SSFLSAALTA  60
KLRQCSYLAS LDTKMEHETA NKHHLLSPVL TQSLTCLRLD TEKSDLGIWR KTAGKLKDSK  120
WVMTVKFGSG SDFDRRPRLK QEETEDAIAL EMIEELLHPT SVEFSSQTDP KKVKRAEYHT  180
EP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NPV77e-38A9NPV7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-21ERF family protein