PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057204-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 215aa    MW: 24015.7 Da    PI: 4.87
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057204-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-162573355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       kG+r +k +g+Wv+eIr p++   r +++lg++ t+e+Aa+a++aa  +l+g
  PSME_00057204-RA 25 LKGIRLRK-WGKWVSEIRMPKS---REKIWLGSYETKEQAARAYDAALYCLKG 73
                      59***999.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6132481IPR001471AP2/ERF domain
SMARTSM003804.5E-252487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-272583IPR001471AP2/ERF domain
PRINTSPR003673.6E-72536IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-192583IPR016177DNA-binding domain
CDDcd000185.36E-252683No hitNo description
PfamPF008478.5E-102673IPR001471AP2/ERF domain
PRINTSPR003673.6E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEKTNPQEHD HDLADEGRGQ TARQLKGIRL RKWGKWVSEI RMPKSREKIW LGSYETKEQA  60
ARAYDAALYC LKGPTATFNF PDSVPLIPPA SSRSRQQIKD AAKKYALGEL PSTSPSLHSN  120
RMEEPAFLHS NSMEEPAFLS PLQSLSVLEM ELSSDPEKLW QSLFAGTDGS GCHYLDNFPS  180
IDEASASASA SELFPTSRES YTSVDPTELW NFGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-141281272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S1PRQ77e-57A0A2S1PRQ7_9SPER; Dehydration-responsive element binding transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-36ERF family protein