PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057216-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 224aa    MW: 24926.5 Da    PI: 10.4468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057216-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-1760110255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r+++ +g++ AeIrd    g + +r++lg+f t+eeAa a+++a++ ++g
  PSME_00057216-RA  60 RYRGLRRRP-WGKFTAEIRDS---GrRGARVWLGTFKTPEEAAMAYDKAALLIHG 110
                       8********.**********4...5444**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-2859119No hitNo description
Gene3DG3DSA:3.30.730.105.6E-2960118IPR001471AP2/ERF domain
PfamPF008474.3E-1260107IPR001471AP2/ERF domain
SMARTSM003808.9E-3360124IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2160120IPR016177DNA-binding domain
PROSITE profilePS5103222.52460118IPR001471AP2/ERF domain
PRINTSPR003674.2E-106172IPR001471AP2/ERF domain
PRINTSPR003674.2E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MILFQLLNEP AANLGWTAIH NQQEMAIPGV TGSTTYTPAI CNTKMTQAQG EVAKKPSTKR  60
YRGLRRRPWG KFTAEIRDSG RRGARVWLGT FKTPEEAAMA YDKAALLIHG TRASLNFPIE  120
VVTNALADTT EKWSSKLISS RQKQKQKQKH IKVSHHHIEL RKKMDAPDAG STIGVDFSKD  180
DGMSSMSRKI RSSDDIHRVD FVLESPPPEK HFICSAASGL VNDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2559121163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-29ethylene response factor 1