PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00057235-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 258aa    MW: 28255.7 Da    PI: 4.7621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00057235-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1858106355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ykGVr ++ +g+Wv+eIr+p++   ++r++lg+f+t+++Aa+a++ a+  l+g
  PSME_00057235-RA  58 YKGVRCRS-WGKWVSEIREPKK---KTRIWLGSFDTPDMAARAYDVAAFHLKG 106
                       9***9666.**********854...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1156106IPR001471AP2/ERF domain
SMARTSM003802.0E-3357121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-2957116IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1957116IPR016177DNA-binding domain
PROSITE profilePS5103222.48457115IPR001471AP2/ERF domain
CDDcd000181.41E-2958117No hitNo description
PRINTSPR003677.0E-95869IPR001471AP2/ERF domain
PRINTSPR003677.0E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDKEEASSLP EHDMVTSSAD TEARNKSAST AMSGMKRIRT QDEAPVQDGT LKLQYPAYKG  60
VRCRSWGKWV SEIREPKKKT RIWLGSFDTP DMAARAYDVA AFHLKGKKHA LLNFPELIDD  120
IPHPISLSPR HIQAAAAKAA VAFNPKKEDW RSPRNPPLIK EPGSSSSHQL CTVVSSGLET  180
ASAEVSGQTY TGDFSSVCGP TEGVGESVAV EEDLFESPNL YTNLAEALLL SPPPLFGVPE  240
LEIEEQDNLE DGFLWSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1558115360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ68e-92D5ABJ6_PICSI; Uncharacterized protein
STRINGBo9g170060.14e-35(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-36ERF family protein