PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00033.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 864aa    MW: 97492.9 Da    PI: 7.5877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00033.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065557579123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  Cg +F  + +Lk+H+++H
  Pahal.A00033.1 557 HRCLQCGACFQKPAHLKQHMQSH 579
                     79*******************99 PP
2zf-C2H222.43.1e-07585609123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp  dC+ s++rk++L+rH+ +H
  Pahal.A00033.1 585 FICPleDCPFSYKRKDHLNRHMLKH 609
                     78*********************99 PP
3zf-C2H211.30.0011616639323
                     ET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                     C+   C+++Fs k n++rH +  H
  Pahal.A00033.1 616 CTvdGCDRRFSIKANMQRHVKEfH 639
                     88889***************9988 PP
4zf-C2H213.30.00024651675123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + C+   C+k F+  s Lk+H  +H
  Pahal.A00033.1 651 FICKeeGCNKAFKYFSKLKKHEESH 675
                     789999***************9988 PP
5zf-C2H217.89.4e-06742766223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C+ sFs+ksnL++H++  H
  Pahal.A00033.1 742 KCTfdGCDHSFSNKSNLTKHMKAcH 766
                     799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.105.4E-732163IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.1963565IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.93466100IPR002885Pentatricopeptide repeat
PfamPF015350.116897IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.903136166IPR002885Pentatricopeptide repeat
PfamPF015350.0033141163IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.745167201IPR002885Pentatricopeptide repeat
PfamPF015350.018169197IPR002885Pentatricopeptide repeat
PfamPF015350.01200226IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.733202232IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.4E-7250326IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.659268298IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0012273298IPR002885Pentatricopeptide repeat
PfamPF130416.5E-11298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.09299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-7301335IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.988334364IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.686370400IPR002885Pentatricopeptide repeat
PfamPF015350.018373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.4E-7387464IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.52436470IPR002885Pentatricopeptide repeat
SMARTSM0035522511533IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-4554576IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.383557584IPR007087Zinc finger, C2H2
SMARTSM003550.057557579IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280559579IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-10569611No hitNo description
Gene3DG3DSA:3.30.160.601.9E-11577611IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.037585614IPR007087Zinc finger, C2H2
SMARTSM003551.9E-4585609IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280587609IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-7595645No hitNo description
Gene3DG3DSA:3.30.160.603.2E-8612641IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512614644IPR007087Zinc finger, C2H2
SMARTSM003550.027614639IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280616639IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-6648675IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.18651675IPR007087Zinc finger, C2H2
SMARTSM003550.013651675IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280653675IPR007087Zinc finger, C2H2
SMARTSM003557.5683708IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280685708IPR007087Zinc finger, C2H2
SMARTSM0035524711732IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.15E-9726783No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6726763IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884741771IPR007087Zinc finger, C2H2
SMARTSM003554.1E-4741766IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280743766IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-5770794IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.245772798IPR007087Zinc finger, C2H2
SMARTSM003552.6772798IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280774798IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MNRSICHHLL SQCKTLRELQ KLHAQAVAQG LHPHRQSVSC KIFRCYADFG RAADARKLFD  60
EIPRPDLVSF TSLMSLHIQL ERHREAVSLF SLAVSDGHRP DGFAVVGALS ASGGAGDQQV  120
GRAVHGLIFR LGLDSEVVVG NALVDMYSRC GKFESAVLVF DRMFLKDEIT WGSMLHGYIK  180
CAGLDLALSF FDQMPVKSVV AWTALITSHV QGRLPVRALE LFARMILESH RPTHVTIVGV  240
LSACADIGAL DLGRIIHGYG SKCNASSNII VSNALMDMYA KSGSIEMALS VFQEVQSKDA  300
FTWTTMISCF TVQGDGRKAL ELFWDMLRSG VVPNSVTFVS VLSACSHAGL IEEGRELFGT  360
MRETYSIDPQ IEHYGCMIDL LGRGGLLEEA EALIVDMNVE PDIVIWRSLL SACLVHHNDR  420
LAEIAGKEIM KREPGDDGVY VLLWNMYASS NKWREAREIR QQMLTRKIFK KPGCSWIEVD  480
GVVHEFLMCS GDEIDGDASV GQKGFKDIRR YKCEFCTVVR SKKCLIQAHM VAHHKDELDK  540
SETYDSNGEK IVCEEEHRCL QCGACFQKPA HLKQHMQSHS NERLFICPLE DCPFSYKRKD  600
HLNRHMLKHQ GKLFGCTVDG CDRRFSIKAN MQRHVKEFHE DENVTKSNQQ FICKEEGCNK  660
AFKYFSKLKK HEESHVKLNY IEVVCCEPGC MKMFTNVDCL RAHNQSCHQH VQCEMCGEKH  720
LKKNIKRHLQ AHDEVPSGER IKCTFDGCDH SFSNKSNLTK HMKACHDQLK PFTCRVAGCG  780
KAFTYKHVRD NHEKSSAHVY VEGDFEEMDE QLRSRPRGGR KRKALTVETL TRKRVTILGE  840
ASSLDDGEEY LRWLLSSGDD SAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-5694133338PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1814822RPRGGRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795590.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
TrEMBLK3Z0X60.0K3Z0X6_SETIT; Uncharacterized protein
STRINGPavir.J03392.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-116transcription factor IIIA