PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00142.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 302aa    MW: 32399.5 Da    PI: 7.0739
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00142.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-18208241134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C +t+Tp+WR gpdg+ tLCnaCG++y  ++
  Pahal.A00142.1 208 CRHCDSTETPQWRAGPDGPGTLCNACGIRYTMNK 241
                     ******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-15202256IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268202240IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15204265No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14206242IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.59E-16207263No hitNo description
PfamPF003203.3E-16208242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTELVISCLS PHDFPDVAVC DGSCGGGGGC PCLLHAGLCC PDDPLDTIMN NPDLFNDDLP  60
EDVFIAAALP PPHRGVLPTG GGKEVLDVDA ADDVGCRDGA ACSDGAPRLP PAVHAALSDS  120
SWTTTSSLET ESPPPPVSRL VVPRKKRDTS VKRRKRLWSL DMPSVPASRD SASGGDGDQD  180
GRRSVDGGVR PRLLGARPRN TRTQQRACRH CDSTETPQWR AGPDGPGTLC NACGIRYTMN  240
KLLPEYRPST SPSFRSDKHS NRHRKVVKLR ETKQVLKEKN VNMLPAPNYG DFMDVWIGND  300
G*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804973.10.0uncharacterized protein LOC112883918
TrEMBLA0A2T8KTM50.0A0A2T8KTM5_9POAL; Uncharacterized protein
STRINGSi019572m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-27GATA transcription factor 1