PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00166.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 298aa    MW: 31706.5 Da    PI: 5.2088
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00166.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.98.2e-22193255163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++
  Pahal.A00166.5 193 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAEALRSENSSLRAELERIRKEYEQLLSQN 255
                     89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.9E-9133IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.5E-2363175No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-17190254No hitNo description
SMARTSM003388.1E-21193257IPR004827Basic-leucine zipper domain
PfamPF001703.4E-20193255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.265195258IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11196253No hitNo description
CDDcd147021.03E-23198248No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MWGAQHMVPP YGTPPSPYVV YPPGTVYAHP STPPGMHPFS HYSMPTNGHA ETPGAAPSAP  60
EMNGKNEPGR MSAPSANGIT SHSESGSESE SEGSDANSQN DSQSKDNDGK EDGVFCQYAG  120
SSQNGISYSV SQGMLNQTMP MVPIQPGAMV GVPGSTANLN IGMDYWAAPG SATVPATQGK  180
ATSGSARGDQ WDERELKKQK RKQSNRESAR RSRLRKQAEC EELGQRAEAL RSENSSLRAE  240
LERIRKEYEQ LLSQNASLKE KLGATSDSIP DMNEQNDGGG SGYKKQPDSD AQPGNES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215RRSRLRK
2209216RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798999.10.0transcription factor HBP-1a-like isoform X1
RefseqXP_025799002.10.0transcription factor HBP-1a-like isoform X4
SwissprotP239221e-106HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLA0A2S3GL790.0A0A2S3GL79_9POAL; Uncharacterized protein
TrEMBLA0A2T8KTV00.0A0A2T8KTV0_9POAL; Uncharacterized protein
STRINGPavir.Aa03436.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-72basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]