PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00247.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 329aa    MW: 35873.1 Da    PI: 8.0347
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00247.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32249302154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     kprlrWt eLHerFveav++LGG+ekAtPk +l+lmkv+gLt++hvkSHLQk R
  Pahal.A00247.3 249 KPRLRWTLELHERFVEAVNKLGGPEKATPKGVLKLMKVEGLTIYHVKSHLQKCR 302
                     79**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-29248303IPR009057Homeodomain-like
SuperFamilySSF466892.51E-16248304IPR009057Homeodomain-like
PROSITE profilePS5129411.646248306IPR017930Myb domain
TIGRFAMsTIGR015572.4E-24249304IPR006447Myb domain, plants
PfamPF002497.7E-9251301IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDHTCTAPQP SAHSLFRAKS DHCGSAHDPQ SSCASAQSSS VKSEMVGSLS LTKILPLDLH  60
KRSPESNPER SASRASQAQL SDPISSSSST FCTSMFSLKT SSGSCRQKGA LPFLPHPPKC  120
EEQQQQISAR QPSSSSSLLF GADLSNGGHD DAEHSGDLKD FLNLSGDVSE GSFPGESNSM  180
AFSEQMEFQF LSEQLGIAIT NNEESPRLDD IYDRPPQTSS SYSDQENLQS AASLVKVQLS  240
SSRAEVCNKP RLRWTLELHE RFVEAVNKLG GPEKATPKGV LKLMKVEGLT IYHVKSHLQK  300
CRNIVSPNIF QRQKKIRSPL QKARNLNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-24249302255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q6YXZ4}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799346.10.0protein PHOSPHATE STARVATION RESPONSE 3-like
SwissprotA2X0Q01e-119PHR3_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A2T7F1Q40.0A0A2T7F1Q4_9POAL; Uncharacterized protein
STRINGPavir.Aa03223.1.p1e-179(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-42G2-like family protein