PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00251.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 475aa    MW: 50987.8 Da    PI: 9.4972
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00251.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.6e-41181257278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     CqvegC+ dls+ak+yhr+hkvCe hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+
  Pahal.A00251.1 181 CQVEGCKIDLSSAKDYHRKHKVCESHSKAPKVVVAGLERRFCQQCSRFHGLDLFDQKKRSCRRRLNDHNARRRKPQP 257
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-33174242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.752178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-38179260IPR004333Transcription factor, SBP-box
PfamPF031102.0E-31181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGSFRMDWNQ KGSVLWDWEN LPLIGTNGNE SAKMTATQAE AKFSGAEVTR HGSVHSSCGT  60
FSSNSEMGYG SSKSSISATI DSSPKARKNM ELSFAPARVS DKNTGRNTVL GKVDDARTSP  120
SSVIAISSGE PVLSLKLGKR TYFEDVCGGQ SVKSLPSDTS AVTPASVKKA KAAQNAQNTY  180
CQVEGCKIDL SSAKDYHRKH KVCESHSKAP KVVVAGLERR FCQQCSRFHG LDLFDQKKRS  240
CRRRLNDHNA RRRKPQPEAI SFGSSRLSTM FYDARQQTTL HFGQAPYGQI RSCASSSWDN  300
PGGAFKFAET KAPWLKPTRA AGIDGLHLSS QQVWNNIMPH GGHQDFDGFM AFKGTSAKVL  360
NQGVEASAAV SDSNGNPDLQ RALSLLSNNS AGAGNNQPTT QLHPGLSTVA STSDAVMQAS  420
SPGLWQDGAA LDLHARFQAL DPLGSGSTIA TAHELQLPRP SLYDGSSSHY DLMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KKRSCRRRLNDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826432.10.0squamosa promoter-binding-like protein 3
RefseqXP_025826439.10.0squamosa promoter-binding-like protein 3
RefseqXP_025826447.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q61e-178SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-178SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A2S3GL660.0A0A2S3GL66_9POAL; Uncharacterized protein
STRINGPavir.Aa03225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-42squamosa promoter binding protein-like 2