PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00277.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 742aa    MW: 82231.2 Da    PI: 7.1094
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00277.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.8e-09452496852
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +e +e+L + F++n  p ++ +e L+k+l+++ +++  WF+N R
  Pahal.A00277.1 452 PPEAVEVLRKSFAENELPPRDVKENLSKELDISFEKIDKWFKNTR 496
                     57899**************************************99 PP
2PHD33.97.2e-12197252151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++  s  +++++lC+g Ck+++H kC +++le++  p +   wlC+ C++k
  Pahal.A00277.1 197 MCSTCKSheSFPSNKIILCEGaCKRAYHEKCSEPPLEKNALPTSslGWLCKFCSCK 252
                     6******65555*******966********************999********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.56E-12193255IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.4E-11194252IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.104195252IPR019787Zinc finger, PHD-finger
PfamPF006282.3E-9197252IPR019787Zinc finger, PHD-finger
SMARTSM002491.3E-7197250IPR001965Zinc finger, PHD-type
PROSITE patternPS013590198249IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.3E-10438496IPR009057Homeodomain-like
SMARTSM003893.0E-9442506IPR001356Homeobox domain
PROSITE profilePS5007111.953442502IPR001356Homeobox domain
SuperFamilySSF466891.15E-9444509IPR009057Homeodomain-like
CDDcd000862.97E-9446506No hitNo description
PfamPF000461.7E-6452496IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MRSSENKTVC SNSLRSSKRR KETSSELIPV SNRPSRRNAS RQCKSDSPLK GSPRKDRNAT  60
LAKSIKKKYH CSPMKRRRGS DSVAGKIVTG LVARRKKKRK RQNIDDAIRL ERRARYFLIK  120
IKLEQNLLDA YSGDGWNGQS REKIKPEKEL QRAKKQIIKC KIAIRDVIRQ LDLYNSTGGV  180
DDPVMPPVAR TNSEHIMCST CKSHESFPSN KIILCEGACK RAYHEKCSEP PLEKNALPTS  240
SLGWLCKFCS CKVKILEAIN AHLGTNFTVK CPFEDVFKEA TEQIDSEDAL DEDWLSEYSG  300
DEDYDPEENE ASSSCMNSGE EIMSDDSNGS GSPLYSPNDD IPEFISVEFN NAEGFCHANL  360
DLGIDSSEDD CAQILTHQRP RRDVDYRRLN EEMFGKIIEN EEPSEDEDWG HDRRKKRKTR  420
ARSVGDNSVE GFSNVISDEK IQKKGRKLFR IPPEAVEVLR KSFAENELPP RDVKENLSKE  480
LDISFEKIDK WFKNTRCAAL RDRKAEGNSR STAPSKSSRS KGKAGISGKA ERNGHVTASS  540
NNLGTGEEKA ILGKVDSGDN SCFVPLSEII NVPTRLQRNL EKRKMESTSS PVRPACSPTD  600
QVKESTSPTS KSCLWTDLSH PINNEVSTGE QAASQLDSGA CAEEQAAPQM DTGACAEEQA  660
ASEMDTGACA EEQAAPLVDV GASDYQPFLD VIDEMCGLEC RLQKLKKNML SSGAEGCGNG  720
GSDMKNQAVV LVPSAELKEK A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17597RRRGSDSVAGKIVTGLVARRKKK
29398RRKKKR
39399RRKKKRK
494100RKKKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814275.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2S3GLL40.0A0A2S3GLL4_9POAL; Uncharacterized protein
STRINGPavir.J02165.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-88pathogenesis related homeodomain protein A