PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00292.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 240aa    MW: 25825.9 Da    PI: 10.6634
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00292.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18124178256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++t+ q   Le+ F+ ++ +s+ e++eLA+++gL+ rqV vWFqNrRa+ k
  Pahal.A00292.1 124 RKKLRLTAAQAAMLEDSFRAHNILSHGEKQELARRVGLSARQVEVWFQNRRARTK 178
                     678899***********************************************98 PP
2HD-ZIP_I/II1132e-36124212189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl++ q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ ++Lr+
  Pahal.A00292.1 124 RKKLRLTAAQAAMLEDSFRAHNILSHGEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLTDENARLRRDLADLRA 212
                     69***********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.957120180IPR001356Homeobox domain
SMARTSM003891.7E-14122184IPR001356Homeobox domain
SuperFamilySSF466893.01E-18123189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-17124178IPR009057Homeodomain-like
CDDcd000864.78E-12124181No hitNo description
PfamPF000464.6E-16124178IPR001356Homeobox domain
PRINTSPR000312.1E-6151160IPR000047Helix-turn-helix motif
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PRINTSPR000312.1E-6160176IPR000047Helix-turn-helix motif
SMARTSM003407.0E-13180223IPR003106Leucine zipper, homeobox-associated
PfamPF021836.2E-8180212IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSSLTTAGSS EEHHYSVSAE EVGTHLSLGI GGSGSGGGGG RSRPRTVQLF GEVLSLQGDD  60
HDVGERHREP TAPPASRKRR DRGGSGAAGV AASRQQNKKA RKLQDADDGD RTRSMTSAGA  120
GTGRKKLRLT AAQAAMLEDS FRAHNILSHG EKQELARRVG LSARQVEVWF QNRRARTKLK  180
QTEVDCELLR RWCDRLTDEN ARLRRDLADL RAPARVAVCA SCCDRQMVAA AAVRAGEMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797072.11e-172putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX64e-45HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A2S3GL631e-170A0A2S3GL63_9POAL; Uncharacterized protein
STRINGPavir.Aa03244.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.17e-32homeobox protein 2