PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00388.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 74aa    MW: 8399.56 Da    PI: 11.774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00388.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-073356126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+ C  ++r G C++ d+C+FaHg
  Pahal.A00388.1 33 YKTKMCALWQR-GGCSR-DTCSFAHG 56
                    9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.9E-132762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-63162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.3853258IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-43356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MRDRSVDREF PSRERGDRPP PGMLGPPRRG PAYKTKMCAL WQRGGCSRDT CSFAHGHAEL  60
RRFPGSRTSF PPRA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9543143e-86EU954314.1 Zea mays clone 1462258 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815379.15e-48zinc finger CCCH domain-containing protein 13-like isoform X3
SwissprotQ6H7U23e-22C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A2T7F2741e-46A0A2T7F274_9POAL; Uncharacterized protein
TrEMBLA0A2T8KU001e-46A0A2T8KU00_9POAL; Uncharacterized protein
STRINGPavir.Aa03280.1.p2e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.14e-09C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]