PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00412.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 167aa MW: 18316.1 Da PI: 11.5098

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00412.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.1	2e-12	30	71	8	49
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 r+v fs r+g++KKA +v ++a avi+fs+ gk y + Pahal.A00412.1 30 ERHVCFSEHRHGLFKKATKFCVRTGAHLAVIMFSPAGKPYSF 71 69***********************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.0E-10	12	74	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.03	12	75	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-16	15	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-15	29	71	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MAGGERKRKD TLGLQKIEIK RQAHRVPREE RHVCFSEHRH GLFKKATKFC VRTGAHLAVI 60 MFSPAGKPYS FGHPSVNATV ERNHDPGSYV PLARETTHPA VLYEYGSEGE RLAKAIQAGG 120 AAAGRARTVS EVRGRRRRRV PINNPNRGRG GLLCKILGGF IKNIGS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806000.1	1e-118	uncharacterized protein LOC112884711
TrEMBL	A0A2T7F292	1e-108	A0A2T7F292_9POAL; Uncharacterized protein
STRING	Si019299m	8e-30	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13309	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	5e-18	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Pahal.A00412.1