PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00482.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 308aa    MW: 32510.1 Da    PI: 5.1855
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00482.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.16.8e-17134186358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l   +   ++
  Pahal.A00482.1 134 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDAN---QQ 186
                     68***************************************9996555444...43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-18132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185134186IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-13135187No hitNo description
PfamPF001703.0E-14135184IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-13136187No hitNo description
CDDcd147023.15E-23137187No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKKCASELEL EAFIDAAAAA EHKPGHDIAA QAAFAAGVFS PGDLSGFSFA DSNTLNGSIP  60
NHLWSHNHNV RHPAVSTTIE SQSSICAAAS PTSATNLYLK ESQTLGGTSG SDSDSESLLD  120
IEGGPCEQST NPQDVKRMRR MVSNRESARR SRKRKQAHLA DLETQVDQLR GENASLFKQL  180
TDANQQFTTA VTDNRILKSD VEALRVKVKL AEDMVARGAL SCGLGSLGLS PVLNPRQACR  240
GPDVLSGLDF AGDGACFAGL SPTEQVQNSP LQSIASLESL ENRMNSEVTS CGGPGVDVWP  300
WDGGLSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRSRKRK
2148155RRSRKRKQ
3150155SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346890.0BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
GenBankJX4699220.0JX469922.1 Zea mays subsp. mays clone UT3178 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792179.10.0bZIP transcription factor RISBZ4-like isoform X1
SwissprotQ6H5001e-141RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A2S3GLT80.0A0A2S3GLT8_9POAL; Uncharacterized protein
STRINGSi017778m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-40basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]