PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00502.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 492aa    MW: 52146.8 Da    PI: 7.872
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00502.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.64.8e-40250326177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq+egC+adls ak+yhrrhkvCe h+ka++v++ g++qrfCqqCsrfh l efD++krsCr+rL +hn+rrrk++
  Pahal.A00502.1 250 RCQAEGCKADLSAAKHYHRRHKVCEYHAKAAAVAAGGKQQRFCQQCSRFHVLAEFDDAKRSCRKRLTEHNRRRRKPA 326
                     6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-33243312IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.915248325IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-37249326IPR004333Transcription factor, SBP-box
PfamPF031101.8E-30251324IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSLSLSTVVD QAFLTTHRDP HGFTQFPHAH IGARRPFPVL RSSLALHPAM KSSSRMMMNT  60
NTMAAPTNDV DFSFGAMQAQ PYAGFDAGAM AMPSVERPLL QHHQNHQLYD SFDLAAAGFP  120
PFQEPGLLPP ASLPLPPSMV MAMPSPLQLP LPGVLTPAEV YPFGGAGGAA AFLKREDGHH  180
QLVDAGGGGT IGLNLGRRTY FSPADVLAVD RLLTRSRLGG GTGVGMGLGM GMLGLGLGAA  240
HHHHQHQPPR CQAEGCKADL SAAKHYHRRH KVCEYHAKAA AVAAGGKQQR FCQQCSRFHV  300
LAEFDDAKRS CRKRLTEHNR RRRKPAGAQG KDSPPPPPPK RAADTCVAAS HSSDHHHKCA  360
SAMAAAKLTA ISPNGSGVSC LDAMDNGHSS GGGAAPTALS LAALPPLHDE KDDGGGLDSM  420
LMMRQVQGRD DDEHRRFLTS LVMQQQQQQD HQHDDGSGGH DGVGGGNILS CPSVSDHQNG  480
GCNGFFEVDF I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-272513241184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307324KRSCRKRLTEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116141e-134AJ011614.1 Zea mays mRNA for SBP-domain protein 1.
GenBankEU9668911e-134EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds.
GenBankKJ7280091e-134KJ728009.1 Zea mays clone pUT6144 SBP transcription factor (SBP10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798015.10.0squamosa promoter-binding-like protein 5
SwissprotQ0E3F84e-76SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A2S3GLW20.0A0A2S3GLW2_9POAL; Uncharacterized protein
STRINGSi017338m1e-159(Setaria italica)
STRINGSb04g005180.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-32squamosa promoter binding protein-like 8