PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00620.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 159aa    MW: 17907.1 Da    PI: 8.2323
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.5e-1368114551
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                     ++ rr+++NRe+ArrsR RK+ +++ L   v+eL   N++L  el++
  Pahal.A00620.1  68 RKKRRLASNRESARRSRVRKQRRLDDLSSQVAELLDTNQRLLIELNH 114
                     7899**************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.1E-1164128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-964115No hitNo description
PROSITE profilePS5021710.65766115IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.21E-1068117No hitNo description
PfamPF001701.6E-968114IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQQNCVANLA CLPGLDFTSF FLPQNDLHIY DVNPLGMVGP YNYNGSTTIS SMSAGTADNQ  60
DRRNNDERKK RRLASNRESA RRSRVRKQRR LDDLSSQVAE LLDTNQRLLI ELNHMIARHS  120
RVVRENAKLR EEAAALQKRL NEMEVEEAEA APGTPEVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RRSRVRK
28087RRSRVRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825344.11e-113basic leucine zipper 8-like
TrEMBLA0A270R4V21e-112A0A270R4V2_9POAL; Uncharacterized protein
STRINGSi019099m3e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-07basic leucine-zipper 42