PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00644.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 313aa    MW: 33587.1 Da    PI: 4.9686
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00644.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.22e-09132180351
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                     ++k+ +r+++N+ +A +sR+RKk +++ Le k+k Leae  +L   l+ 
  Pahal.A00644.1 132 DSKKKKRRMRNKDSAMKSRERKKLYLKDLEMKSKYLEAECCRLSYALQC 180
                     579************************************9888766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0019130194IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-12130193No hitNo description
PROSITE profilePS502179.714132174IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-10134192No hitNo description
PfamPF001701.9E-7134189IPR004827Basic-leucine zipper domain
PROSITE patternPS000360137152IPR004827Basic-leucine zipper domain
CDDcd147045.65E-10144186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAAAGVWGGG EYDLPLEEVD AVLASFSGDP AAVFAPLLAP DAEAGASREL LAAGEGHREG  60
LGEIEKFLME DYEDEAAMDA DGVDEFLDGV LVGDGEDDGS PKSTGERSAD GAGASAGDDE  120
EVLGADGGDD LDSKKKKRRM RNKDSAMKSR ERKKLYLKDL EMKSKYLEAE CCRLSYALQC  180
CAAENMALRQ SLLKDRPVGA HTAMQESAVL TETLPLVSLL WLVSIVCLFL TPGVPKRSLV  240
APSSHGRDLV KLARTSTNGV KMFRLTTKGD DPRSLELVRL GRRCRSTRAR IRSPLLPWHA  300
VADTAGHRAI LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138KKKKRR
2134138KKKRR
3136153KRRMRNKDSAMKSRERKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803229.10.0bZIP transcription factor 50-like
SwissprotQ69XV04e-76BZP50_ORYSJ; bZIP transcription factor 50
TrEMBLA0A2S3GM810.0A0A2S3GM81_9POAL; Uncharacterized protein
STRINGPavir.J35667.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69343750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.14e-13basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Wakasa Y, et al.
    Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.
    Plant J., 2011. 65(5): p. 675-89
    [PMID:21223397]
  2. Lu SJ, et al.
    Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses.
    Mol Plant, 2012. 5(2): p. 504-14
    [PMID:22199238]