PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00650.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 226aa    MW: 23509 Da    PI: 10.2753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00650.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-072651227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    kt+lC+ +     Ck G++C+FaHg+
  Pahal.A00650.3 26 KTRLCNKYNTAEGCKWGGKCHFAHGE 51
                    8***********************96 PP
2zf-CCCH35.51.6e-11191215126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C +fa+ G C +GdrC+FaH+
  Pahal.A00650.3 191 FKTKMCENFAK-GSCTFGDRCHFAHV 215
                     69*********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-132156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-82355IPR000571Zinc finger, CCCH-type
SMARTSM003560.432451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0422452IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-42651IPR000571Zinc finger, CCCH-type
SMARTSM003225.2E-1094164IPR004087K Homology domain
PROSITE profilePS5008414.63495159IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-1495163IPR004088K Homology domain, type 1
CDDcd001051.26E-1397159No hitNo description
SuperFamilySSF547911.98E-1497187IPR004088K Homology domain, type 1
PfamPF000139.9E-1197161IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.2E-16188222IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7190216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.849190217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-9190221IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8191215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTNLGGPAVA PPGRMMMGGP PTPTVKTRLC NKYNTAEGCK WGGKCHFAHG ERELGKPMLM  60
DSSMHSPVGP RPTGHFAPPP MANPGMATPA SFGASATAKI SVDASLAGGI IGRGGVNTKQ  120
ISRVTGAKLA IRDHESDTSL KNIELEGTFD QIKHASAMVR ELIVNISGSA PPLAKNPPRG  180
PHRGGGTGSN FKTKMCENFA KGSCTFGDRC HFAHVENELR KPAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816019.11e-164zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-123C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2S3GMI41e-163A0A2S3GMI4_9POAL; Uncharacterized protein
TrEMBLA0A2S3GMQ61e-164A0A2S3GMQ6_9POAL; Uncharacterized protein
STRINGSi019853m1e-141(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-52C3H family protein