PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00660.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 342aa MW: 36202.4 Da PI: 9.6855

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00660.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	162	202	3	43
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + k rr+++NReAAr+sR+RKka+i++Le+ L++ + Pahal.A00660.4 162 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 202 67999*************************86555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-8	160	206	No hit	No description
SMART	SM00338	6.4E-5	160	213	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	162	206	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-9	163	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.56E-7	164	207	No hit	No description
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.2E-27	248	327	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGDRTWQQPH EQASYPHAGM VQAASSSAHG GIIRKEAGGG YDMAEFDQAL FLYLNGQDQT 60 SAIIQDQPQT LNIFPSQPMH VVEPAPPKGS MLGTNNTTPN AGAGPSSKRA PPSSNNAVPP 120 AGGSKKDGKP AAVKREAGSS GGAMGSGTPS TSNQQEGPRT PDAKTLRRLA QNREAARKSR 180 LRKKAYIQNL ETSRIRLSQL EQELHRSRNQ GAVFGGGVLS GGNGGLSPEA AWFDMEHARW 240 QEEDGKMMRH LRAALEAEEH AAAPPAAEAQ LRQMVDAAAA HHGLLAELKA AVARADAFHL 300 VSGAWVSAAE RCFLWIGGFR PSELIKVSSN NLNGLISTQA N*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGDRTWQQPH EQASYPHAGM VQAASSSAHG GIIRKEAGGG YDMAEFDQAL FLYLNGQDQT  60
SAIIQDQPQT LNIFPSQPMH VVEPAPPKGS MLGTNNTTPN AGAGPSSKRA PPSSNNAVPP  120
AGGSKKDGKP AAVKREAGSS GGAMGSGTPS TSNQQEGPRT PDAKTLRRLA QNREAARKSR  180
LRKKAYIQNL ETSRIRLSQL EQELHRSRNQ GAVFGGGVLS GGNGGLSPEA AWFDMEHARW  240
QEEDGKMMRH LRAALEAEEH AAAPPAAEAQ LRQMVDAAAA HHGLLAELKA AVARADAFHL  300
VSGAWVSAAE RCFLWIGGFR PSELIKVSSN NLNGLISTQA N*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791986.1	0.0	transcription factor TGAL9-like isoform X1
Swissprot	Q0E342	1e-123	TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBL	A0A2S3GMA2	0.0	A0A2S3GMA2_9POAL; Uncharacterized protein
STRING	Pavir.J04905.1.p	1e-178	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	9e-57	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.A00660.4

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]