PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00660.5

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 341aa MW: 36046.2 Da PI: 9.4145

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00660.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	161	201	3	43
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + k rr+++NReAAr+sR+RKka+i++Le+ L++ + Pahal.A00660.5 161 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 201 67999*************************86555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-8	159	205	No hit	No description
SMART	SM00338	6.4E-5	159	212	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	161	205	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-9	162	201	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-7	163	206	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.1E-27	247	326	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGDRTWQQPH EQASYPHAGM VQAASSSAHG GIIKEAGGGY DMAEFDQALF LYLNGQDQTS 60 AIIQDQPQTL NIFPSQPMHV VEPAPPKGSM LGTNNTTPNA GAGPSSKRAP PSSNNAVPPA 120 GGSKKDGKPA AVKREAGSSG GAMGSGTPST SNQQEGPRTP DAKTLRRLAQ NREAARKSRL 180 RKKAYIQNLE TSRIRLSQLE QELHRSRNQG AVFGGGVLSG GNGGLSPEAA WFDMEHARWQ 240 EEDGKMMRHL RAALEAEEHA AAPPAAEAQL RQMVDAAAAH HGLLAELKAA VARADAFHLV 300 SGAWVSAAER CFLWIGGFRP SELIKVSSNN LNGLISTQAN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791992.1	0.0	transcription factor TGAL9-like isoform X2
Swissprot	Q0E342	1e-121	TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBL	A0A2S3GMJ4	0.0	A0A2S3GMJ4_9POAL; Uncharacterized protein
STRING	Pavir.J04905.1.p	1e-180	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	5e-56	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.A00660.5

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]