PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00660.9
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 420aa    MW: 44949.9 Da    PI: 9.6159
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00660.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-11100140343
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                     + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Pahal.A00660.9 100 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 140
                     67999*************************86555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-898144No hitNo description
SMARTSM003386.4E-598151IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979100144IPR004827Basic-leucine zipper domain
PfamPF001709.6E-9101140IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.13E-7102145No hitNo description
PROSITE patternPS000360105120IPR004827Basic-leucine zipper domain
PfamPF141444.3E-27186265IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MYVFILETLN IFPSQPMHVV EPAPPKGSML GTNNTTPNAG AGPSSKRAPP SSNNAVPPAG  60
GSKKDGKPAA VKREAGSSGG AMGSGTPSTS NQQEGPRTPD AKTLRRLAQN REAARKSRLR  120
KKAYIQNLET SRIRLSQLEQ ELHRSRNQGA VFGGGVLSGG NGGLSPEAAW FDMEHARWQE  180
EDGKMMRHLR AALEAEEHAA APPAAEAQLR QMVDAAAAHH GLLAELKAAV ARADAFHLVS  240
GAWVSAAERC FLWIGGFRPS ELIKVAVRHA EPLTEPQAMG VCGVQQWARE AEAALDHELQ  300
AMHRSVSEAV SSDAAALLCP YSDVPGYMAT MSLAISKLAS LEAFVRQADA LRLQALHRLP  360
QILTARQSAR CFLAIADYSH RLRALSELWH TRPRHEPPVT TAAAGSSHGP PYQSRDGLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791994.10.0transcription factor TGAL9-like isoform X3
SwissprotQ52MZ21e-130TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A2T8KUA80.0A0A2T8KUA8_9POAL; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.36e-91bZIP family protein