PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00672.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 409aa    MW: 42739.1 Da    PI: 6.2725
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00672.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.24.2e-98344084374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+l+cA  ++ gd   a+++ a++  +a p+gd+  Rla++f++ALa+r  +    ++++++     + s+   + +++a+ +++++ P+l+f+h
  Pahal.A00672.1  34 LVLACAGLLQRGDVDGARRAAAEVLSTADPRGDAADRLAHHFARALARRADGnkaGGEGVAAPAGGAAPSSGPGAPSATAYLAYNQIAPFLRFAH 128
                     789***********************************************983212334444444444444449999999999************ PP

            GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...v 182
                     ltaNqaIl+a+++   +r+Hi+D+d+ +G+QWp+Llqa+a+R+    gpp++RiTg g+    +++ l +tg+rL+ fA +l++pf+f++l    
  Pahal.A00672.1 129 LTANQAILDAAASGgaRRLHIVDLDAAHGVQWPPLLQAIADRAdpdLGPPEVRITGAGP----DRDVLLRTGDRLRAFAGTLNLPFRFHPLllpC 219
                     *********9986555***************************66667***********....9***************************6655 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleak 274
                     +++l++    eL+++p+E+laVn+vl lh+l  ++++++     +L+ vks++P vv+++e+ea+ +s    ++ +r++ a++yysa+fd+lea+
  Pahal.A00672.1 220 TTQLAADPSTELELHPDETLAVNCVLFLHKLG-SDGEIAA----FLNWVKSMNPSVVTLAEREASIGSDcpeDLHRRVAAAMDYYSAVFDALEAT 309
                     56777778899********************8.6666666....**********************8866669********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     +p+ s +r  vE+e+lg+ei  vva  +a    r + +e+W  + ++aG++p pls +a++qa+lllr ++ s+g+  ee +g+ +lgW++rpL+
  Pahal.A00672.1 310 APPGSADRLAVEQEVLGQEINAVVAPGHAG--RRARGFESWATAARAAGLSPRPLSAFAVSQARLLLRLHYpSEGFVAEEARGACFLGWQTRPLM 402
                     *****************************9..567799********************************************************* PP

            GRAS 369 svSaWr 374
                     svS+W+
  Pahal.A00672.1 403 SVSSWQ 408
                     *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.915387IPR005202Transcription factor GRAS
PfamPF035141.4E-9534408IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLGAPRHDGD AAARAHHQEQ DADAAAGPSS PRGLVLACAG LLQRGDVDGA RRAAAEVLST  60
ADPRGDAADR LAHHFARALA RRADGNKAGG EGVAAPAGGA APSSGPGAPS ATAYLAYNQI  120
APFLRFAHLT ANQAILDAAA SGGARRLHIV DLDAAHGVQW PPLLQAIADR ADPDLGPPEV  180
RITGAGPDRD VLLRTGDRLR AFAGTLNLPF RFHPLLLPCT TQLAADPSTE LELHPDETLA  240
VNCVLFLHKL GSDGEIAAFL NWVKSMNPSV VTLAEREASI GSDCPEDLHR RVAAAMDYYS  300
AVFDALEATA PPGSADRLAV EQEVLGQEIN AVVAPGHAGR RARGFESWAT AARAAGLSPR  360
PLSAFAVSQA RLLLRLHYPS EGFVAEEARG ACFLGWQTRP LMSVSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-535540827375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806722.10.0protein MONOCULM 1
SwissprotQ84MM91e-148MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A2S3GM550.0A0A2S3GM55_9POAL; Uncharacterized protein
STRINGPavir.J22770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.13e-84GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]