PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00815.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 113aa MW: 12746.5 Da PI: 10.0635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00815.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.7e-17	11	91	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA +GFs+rks++k++ +g+i+++ vCs eg+ ++e+ k +trtgC a++++ +k+g w v++++le nH la Pahal.A00815.1 11 EMYNKYAGIIGFSIRKSTTKRR-PDGTIYQKYIVCSGEGHGKPESLK--------GTTRTGCGARIQLVVSKEGIWTVKSVVLEQNHYLA 91 58************998776.9999************9888........89****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-14	11	91	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MAFEYEDNAY EMYNKYAGII GFSIRKSTTK RRPDGTIYQK YIVCSGEGHG KPESLKGTTR 60 TGCGARIQLV VSKEGIWTVK SVVLEQNHYL ASPNKNKNLR SQRPISEADR KAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825432.1	5e-63	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8IGC4	8e-52	A0A2T8IGC4_9POAL; Uncharacterized protein
STRING	TRIUR3_19482-P1	7e-45	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-13	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pahal.A00815.1