PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00890.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 519aa    MW: 54438.1 Da    PI: 7.2675
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084384761854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +Fe+  ++yp+ +e+  LA++ gLt +qV++WF N R +
  Pahal.A00890.1 438 MFENflHPYPKDHEKDVLASRSGLTRNQVSNWFINARVR 476
                     5776679******************************88 PP
2BELL32.42.4e-11300371472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgs...akpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e q+ k+ L ++l+ +d++Y+q+ +++q  ++ F+a +  g+     + + +A +a+S  +r ++ +ia+ i
  Pahal.A00890.1 300 EAQRVKSDLFKMLQLMDEKYNQCLDEIQSTAAKFNALMQPGAvsnGSIRAPFAHRAVSAVYRGMRRRIADEI 371
                     78999*********************************9887222468899*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.5E-4231369IPR006563POX domain
PfamPF075269.8E-23236368IPR006563POX domain
PROSITE profilePS5007111.402417480IPR001356Homeobox domain
SMARTSM003892.8E-6420484IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-25420493IPR009057Homeodomain-like
CDDcd000862.92E-11420481No hitNo description
SuperFamilySSF466891.63E-15421489IPR009057Homeodomain-like
PfamPF059202.4E-15437476IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MASNPSMFAP IGADGMSGGY FMAGGGGGMM SADAPHLHPS VLLEHGGFGF GFADGAVGGA  60
ATASDLGANY AAHNSMLASF ASQLFPTAAA PPHDDHIGGR TPPEEMDEGY AAGSCVAASL  120
QCPGHSGAMA VWSSPASKKP AGTWSSAGGS RAVSVHEPRH IAGLPDVAGF HYPLIAAANA  180
PASSELSLTL CSKSSSDSAL NAADQFSSGG SRSALTELPQ ALYPRARPRP AHFSVVVARS  240
QYAAVAQEVL NDVVGHMLDG VADVAADSCS GGARPSSGSV GAPSVVSSNR LMASSEDGGE  300
AQRVKSDLFK MLQLMDEKYN QCLDEIQSTA AKFNALMQPG AVSNGSIRAP FAHRAVSAVY  360
RGMRRRIADE IMAAASRAAC WGESSSSVTA AGDADRSWES AFIKKHWAAQ QLRRGEQQCW  420
RPQRGLPEKS VAVLKAWMFE NFLHPYPKDH EKDVLASRSG LTRNQVSNWF INARVRLWKP  480
MIEEMYQDLK KSSGVGGQGA AMEPHTSKRR ICEVEEGK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796845.10.0homeobox protein ATH1-like
TrEMBLA0A2S3GNA10.0A0A2S3GNA1_9POAL; Uncharacterized protein
STRINGPavir.Ab00820.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-57homeobox gene 1