PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00897.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 211aa    MW: 23531.8 Da    PI: 9.0566
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00897.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092080755
                    --HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f ++++ee+e+  +  +n+ p++ ++eeLA+k            ++ +qV++WF+NrR+  
  Pahal.A00897.2 20 FLPDEVEEMEARLQplRNPSPDRVAMEELARKFsasterigkvVIQPKQVRNWFCNRRYCS 80
                    66788999999999666*************************9***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00221387IPR001356Homeobox domain
SuperFamilySSF466891.2E-91981IPR009057Homeodomain-like
CDDcd000861.09E-71978No hitNo description
PROSITE profilePS500719.881983IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-82078IPR009057Homeodomain-like
PfamPF000464.6E-72080IPR001356Homeobox domain
PfamPF167191.7E-13129206IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRPPSAWSD GVLAAAPFRF LPDEVEEMEA RLQPLRNPSP DRVAMEELAR KFSASTERIG  60
KVVIQPKQVR NWFCNRRYCS REGKAARAAQ AQGNSAARRV EAYRQLAAGS SAPVHAGSSS  120
GKISMEGSQI KYEAKSDRDG AWYDVDVISF RMSELGEPEA MVRFSGIGAE EAEWVNTRTC  180
LRQRSLPFRA TECVLLRCWD RVLCYKVLQP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-14128206281SHH1 SAWADEE
4iur_B1e-14128206281SHH1 SAWADEE
4iut_A1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-14128206281SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.12e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.12e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.12e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.12e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2S3GN361e-148A0A2S3GN36_9POAL; Uncharacterized protein
STRINGPavir.Ab00825.1.p1e-120(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.21e-40sequence-specific DNA binding transcription factors;sequence-specific DNA binding