PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00925.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 255aa    MW: 26285.5 Da    PI: 4.734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00925.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-184996152
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Pahal.A00925.1 49 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 96
                    57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-124996IPR001471AP2/ERF domain
CDDcd000188.25E-2049108No hitNo description
PROSITE profilePS5103223.03750107IPR001471AP2/ERF domain
SMARTSM003803.7E-3550113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3150109IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2150107IPR016177DNA-binding domain
PRINTSPR003673.5E-105162IPR001471AP2/ERF domain
PRINTSPR003673.5E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MPDGEVSSPA SSGGTSSSLP LLPVEAGARR GGGGAEKRAR DRDGGEKHPS YRGVRMRAWG  60
KWVSEIREPR KKSRIWLGTF PTPEMAARAH DAAALVVKGP AAVLNFPEMA AALPRPASAA  120
ARDVQAAAAR AAAMEPALPP DGSPPAAAAA ASLQPAPVAA AGQQQDEELE AIVERPRLDE  180
DCAELVTTTV TAFGAAPFSF QDVATPAPWC DPVWIDDCAG YAAAAHDDLF GLFGLDGGDH  240
GCWASSVGTL LWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1845108973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048572e-99AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149582e-99AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582812e-99AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795180.11e-180ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-47DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2S3GN471e-178A0A2S3GN47_9POAL; Uncharacterized protein
STRINGPavir.Ab00844.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]