PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00927.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 199aa MW: 20830.4 Da PI: 10.3279

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00927.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.3e-07	26	83	5	53
HHHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-.STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as........kapskK.lsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ +s + ++ ++ + Le+A YI++ Pahal.A00927.1 26 RKTVERNRRNQMNALYSRLDQLVRAgSSpssappavQ-CGPPaMTRPDRLEEAAAYIRQ 83 5789*******************99666999999854.444459999999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.734	21	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-8	24	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.21E-7	26	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-4	27	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDMPPPPPPP PPHFGGPAAG GGRPDRKTVE RNRRNQMNAL YSRLDQLVRA GSSPSSAPPA 60 VQCGPPAMTR PDRLEEAAAY IRQTTERVER LKERKRELTA ARAASSSQGS SSAGAAAEVE 120 VQHLGSGLHA ILVTGAPPSD GASFHRAVRA VEEAGGEVQN AHFSVVGARA IYTIHTLVAE 180 GGIERVVQRL KAALRGDA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005756	5e-50	AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBank	AP014958	5e-50	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798292.1	1e-139	transcription factor bHLH162-like isoform X1
TrEMBL	A0A2S3GNC9	1e-138	A0A2S3GNC9_9POAL; Uncharacterized protein
STRING	Pavir.J36523.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11987	29	38

Link Out ? help Back to Top
Phytozome	Pahal.A00927.1