PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01041.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

CPP

Protein Properties

Length: 426aa MW: 46382.3 Da PI: 6.3107

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01041.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50	5.9e-16	71	110	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeC++a++ Cs++C+C dCkN e Pahal.A01041.2 71 KHNKGCHCKKSGCLKKYCECYQANVLCSKNCRCMDCKNFE 110 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03638	4.4E-4	1	22	IPR005172	CRC domain
SMART	SM01114	0.32	1	26	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	31.284	1	111	IPR005172	CRC domain
SMART	SM01114	2.0E-18	71	112	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.3E-12	74	109	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MYCECFQEQQ FCDGCNCSNC GNIVGNEKAR QEAINAIVQR NPLAFQPKIE NGPSTHNVRK 60 DNSGAVPLVP KHNKGCHCKK SGCLKKYCEC YQANVLCSKN CRCMDCKNFE GSEERKALIQ 120 GDYASDGNQI QQAASVALNG TIGSSGYNCS PVRRKRSHED TLGPRINSEG SMPETQFLQG 180 NHADVSLLAP SSTGFDGHNA ANSQSKSYNP IYRSPLANTI HLTEVNDLVT HMVTACRMAA 240 ATIADNKVNG TTVENQFHVN GGLSNGNCKQ QELKEASQMD ILRRGCSDQP NINEIDSHWS 300 DTAKDSRPAS PTTQALMCDE QETTFGNDYR CSFPSVSCDQ DISEINAAQE NLVLTGLREY 360 LRVIITRGKI KEHKSSSEAA MEPDGQQHHG ATPIAPREVG ENAPSNCAET PRTDQQPTQN 420 AGSER*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MYCECFQEQQ FCDGCNCSNC GNIVGNEKAR QEAINAIVQR NPLAFQPKIE NGPSTHNVRK  60
DNSGAVPLVP KHNKGCHCKK SGCLKKYCEC YQANVLCSKN CRCMDCKNFE GSEERKALIQ  120
GDYASDGNQI QQAASVALNG TIGSSGYNCS PVRRKRSHED TLGPRINSEG SMPETQFLQG  180
NHADVSLLAP SSTGFDGHNA ANSQSKSYNP IYRSPLANTI HLTEVNDLVT HMVTACRMAA  240
ATIADNKVNG TTVENQFHVN GGLSNGNCKQ QELKEASQMD ILRRGCSDQP NINEIDSHWS  300
DTAKDSRPAS PTTQALMCDE QETTFGNDYR CSFPSVSCDQ DISEINAAQE NLVLTGLREY  360
LRVIITRGKI KEHKSSSEAA MEPDGQQHHG ATPIAPREVG ENAPSNCAET PRTDQQPTQN  420
AGSER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-23	1	120	24	132	Protein lin-54 homolog
5fd3_B	1e-23	1	120	24	132	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798802.1	0.0	protein tesmin/TSO1-like CXC 5
TrEMBL	A0A2S3GN49	0.0	A0A2S3GN49_9POAL; Uncharacterized protein
STRING	Pavir.Ab00979.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-82	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pahal.A01041.2