PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01065.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 384aa MW: 41663.6 Da PI: 6.0962

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01065.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.5	1.5e-07	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H+r H Pahal.A01065.1 145 HTCKVCGKGFKRDANLRMHMRGH 167 79*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.91E-6	143	170	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-6	145	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.321	145	172	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0011	145	167	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	147	167	IPR007087	Zinc finger, C2H2
SMART	SM00355	43	194	227	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	27	232	254	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MEVWNNVESS MEAHRELHDH SQAGGSDSDD PRTVLTYLTF LEQKIAHLRG IICSAPRPPR 60 QIVSAELSCI AVQLVSISNT LAAASGATAE EEAKSPPRAA TPSEGDSDSS DHDLHAEDDD 120 ERLPPAGSYE VIELDKEEIL APHVHTCKVC GKGFKRDANL RMHMRGHGEE YKTAAALAKP 180 GRDAPPLPPA RCFYSCPFVG CKRNREHKSF QPLKTAVCVK NHYRRSHCDK SYTCRRCNVK 240 RFSVLADLRT HEKHCGRDRW VCSCGTSFSR KDKLFGHVAA FDGHAPALPP EEDDAAGHSA 300 ANGLGSASDQ VLMDTEAVGR MANHKECFSG SIFDGLSCSD IKGFAMIDGQ CLDNGGGSLS 360 PMDLYSCDLD GFDLFGAPGI DDF*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MEVWNNVESS MEAHRELHDH SQAGGSDSDD PRTVLTYLTF LEQKIAHLRG IICSAPRPPR  60
QIVSAELSCI AVQLVSISNT LAAASGATAE EEAKSPPRAA TPSEGDSDSS DHDLHAEDDD  120
ERLPPAGSYE VIELDKEEIL APHVHTCKVC GKGFKRDANL RMHMRGHGEE YKTAAALAKP  180
GRDAPPLPPA RCFYSCPFVG CKRNREHKSF QPLKTAVCVK NHYRRSHCDK SYTCRRCNVK  240
RFSVLADLRT HEKHCGRDRW VCSCGTSFSR KDKLFGHVAA FDGHAPALPP EEDDAAGHSA  300
ANGLGSASDQ VLMDTEAVGR MANHKECFSG SIFDGLSCSD IKGFAMIDGQ CLDNGGGSLS  360
PMDLYSCDLD GFDLFGAPGI DDF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	1e-131	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794847.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	1e-104	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2S3IGE1	0.0	A0A2S3IGE1_9POAL; Uncharacterized protein
STRING	Pavir.Ia00191.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	4e-96	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.A01065.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]