PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01123.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 361aa    MW: 39709.4 Da    PI: 8.4016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01123.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-1566110348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rW++eE   l++ v+++ +++W+t+ar ++ gR+++qc++rw  yl
   Pahal.A01123.1  66 RWSQEENGNLIRMVNLHSSKSWSTVARSIP-GRSPNQCRDRWMFYL 110
                      8*****************************.***********9875 PP
2Myb_DNA-binding51.81.9e-16117157244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w
   Pahal.A01123.1 117 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 157
                      79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.54E-1247111IPR009057Homeodomain-like
PROSITE profilePS5129411.62459110IPR017930Myb domain
SMARTSM007179.9E-1163112IPR001005SANT/Myb domain
CDDcd001675.93E-1266110No hitNo description
Gene3DG3DSA:1.10.10.602.4E-1966117IPR009057Homeodomain-like
PfamPF139211.7E-1467127No hitNo description
SuperFamilySSF466891.2E-2690167IPR009057Homeodomain-like
PROSITE profilePS5129421.426111165IPR017930Myb domain
SMARTSM007175.2E-13115163IPR001005SANT/Myb domain
CDDcd001671.61E-12118157No hitNo description
Gene3DG3DSA:1.10.10.606.5E-21118166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRRCGGGAPG RRSSGGSTCC SGEIDWITDE RGELLRPSKH LNDAEHKRTA ECLPHKKGNK  60
LKRVCRWSQE ENGNLIRMVN LHSSKSWSTV ARSIPGRSPN QCRDRWMFYL DPAVNNQPWS  120
EHEDIKLIQA HKIHGSKWSK LAKLFPGRTG KAVKNHWPSL MRKQMKSDLV SGLPEQFLYM  180
PNDPSVTKNK GSSTIQSDED SSTNIHVSSD LAVRPKSEQG LAENGRNEST LKGKSYDSMH  240
GNGSVSHSVN VSEKVDGQIA TSNSLSSMDQ KATSATASFP GSLPKEESTN FLEVTPNRGL  300
STMYNHLSND YFDGMCSSAD PESQGLHLSS IADLLDMPYC KSLMIVSPDS PNHGNYTDGM  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-26671657105C-Myb DNA-Binding Domain
1msf_C2e-26671657105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.10.0transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2S3GNF60.0A0A2S3GNF6_9POAL; Uncharacterized protein
STRINGPavir.J04773.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16796912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-33myb domain protein 3r-4