PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01123.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 343aa    MW: 37232.5 Da    PI: 8.2906
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01123.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-125392848
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     Ed  l++ v+++ +++W+t+ar ++ gR+++qc++rw  yl
   Pahal.A01123.5 53 EDGNLIRMVNLHSSKSWSTVARSIP-GRSPNQCRDRWMFYL 92
                     8889*********************.***********9875 PP
2Myb_DNA-binding51.91.8e-1699139244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w
   Pahal.A01123.5  99 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 139
                      79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-74594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-155195IPR009057Homeodomain-like
PROSITE profilePS500908.8975192IPR017877Myb-like domain
PfamPF002495.5E-115392IPR001005SANT/Myb domain
CDDcd001677.98E-105392No hitNo description
SuperFamilySSF466894.4E-2772149IPR009057Homeodomain-like
PROSITE profilePS5129421.42693147IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2196148IPR009057Homeodomain-like
SMARTSM007175.2E-1397145IPR001005SANT/Myb domain
PfamPF002493.5E-1499139IPR001005SANT/Myb domain
CDDcd001671.39E-12100139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRRCGGGAPG RRSSGGSTCC SGEIDWITDE LSACPTRKVI SSRGSAGGLK RKEDGNLIRM  60
VNLHSSKSWS TVARSIPGRS PNQCRDRWMF YLDPAVNNQP WSEHEDIKLI QAHKIHGSKW  120
SKLAKLFPGR TGKAVKNHWP SLMRKQMKSD LVSGLPEQFL YMPNDPSVTK NKGSSTIQSD  180
EDSSTNIHVS SDLAVRPKSE QGLAENGRNE STLKGKSYDS MHGNGSVSHS VNVSEKVDGQ  240
IATSNSLSSM DQKATSATAS FPGSLPKEES TNFLEVTPNR GLSTMYNHLS NDYFDGMCSS  300
ADPESQGLHL SSIADLLDMP YCKSLMIVSP DSPNHGNYTD GM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26471475105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-26471475105C-Myb DNA-Binding Domain
1msf_C3e-26471475105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.10.0transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2S3GNF60.0A0A2S3GNF6_9POAL; Uncharacterized protein
STRINGPavir.J04773.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.23e-33myb domain protein 3r-4